BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008F08LP1|AL425901
(803 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1154 1580 0.0
>3x_Contig1154
Length = 6277
Score = 1580 bits (795), Expect = 0.0
Identities = 800/803 (99%)
Strand = Plus / Minus
Query: 1 agggaaacagaaggatattatcagtacagggggagcaaggaactgaagaaatattcggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 agggaaacagaaggatattatcagtacagggggagcaaggaactgaagaaatattcggaa 2618
Query: 61 tatctgatagctcattttctcatatatatttgtcgtattggcattcaatccgatcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2617 tatctgatagctcattttctcatatatatttgtcgtattggcattcaatccgatcttctc 2558
Query: 121 acctttagaatgcaatttttgcgctttatcaaagatttgtagtgcatagacgatatacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2557 acctttagaatgcaatttttgcgctttatcaaagatttgtagtgcatagacgatatacaa 2498
Query: 181 atctcttaacttcatagtatacgagattctcgtctcgctatcatcgtctgttatgttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2497 atctcttaacttcatagtatacgagattctcgtctcgctatcatcgtctgttatgttcat 2438
Query: 241 tgaagaaatatagtttgacttaagaatgcttttataaaacactattcttttctcaagagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2437 tgaagaaatatagtttgacttaagaatgcttttataaaacactattcttttctcaagagt 2378
Query: 301 ttcgagattcaaatcaaacattgacccacctaaagtatcagtcttcatatctaagtcctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2377 ttcgagattcaaatcaaacattgacccacctaaagtatcagtcttcatatctaagtcctc 2318
Query: 361 atctacgtcaattctatmgatttcaataacatcagataaagtccataccattatctccac 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2317 atctacgtcaattctatagatttcaataacatcagataaagtccataccattatctccac 2258
Query: 421 cgggctttgttggaaaactcttttgataccatcagtaactctcactttaaggtactcgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2257 cgggctttgttggaaaactcttttgataccatcagtaactctcactttaaggtactcgaa 2198
Query: 481 accttgctcataatctactacccatatcgtggaagtattatatagcacaatgaaattcga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2197 accttgctcataatctactacccatatcgtggaagtattatatagcacaatgaaattcga 2138
Query: 541 tcccaagtattcgcmagcgttgaaatcaaaattaacttggaagaaatggtcgtatggcag 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2137 tcccaagtattcgcaagcgttgaaatcaaaattaacttggaagaaatggtcgtatggcag 2078
Query: 601 agctttcaaatagaataagccttcgtctgatgattgtsactccagtaatctctgagattg 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2077 agctttcaaatagaataagccttcgtctgatgattgtaactccagtaatctctgagattg 2018
Query: 661 accatctagtaaaatacagacattatggtttggtccgaaaaggtacctcaatgcccggca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2017 accatctagtaaaatacagacattatggtttggtccgaaaaggtacctcaatgcccggca 1958
Query: 721 cgatcgtgttcgtcttctatcagatgaccataaattcgctatagaagaccaggtatggga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1957 cgatcgtgttcgtcttctatcagatgaccataaattcgctatagaagaccaggtatggga 1898
Query: 781 ttcagtgagtgattcgttatcat 803
|||||||||||||||||||||||
Sbjct: 1897 ttcagtgagtgattcgttatcat 1875
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5960
Number of Sequences: 1807
Number of extensions: 5960
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 803
length of database: 10,358,551
effective HSP length: 16
effective length of query: 787
effective length of database: 10,329,639
effective search space: 8129425893
effective search space used: 8129425893
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)